miRBase entry: ipu-let-7j-1

Stem-loop ipu-let-7j-1


Accession
MI0024453
Description
Ictalurus punctatus ipu-let-7j-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention ipu-let-7j-1
(5 sentences)

Sequence

UGAGGUAGUUGUUUGUACAGUUuuuagggucuguuauucugcccuguuaaggagcuaacuguacagacuacugccuugc
.((((((((.((((((((((((..((((((..(.....).))))))..........)))))))))))).))))))))..

Structure
-U        U            --------uu      cu u 
  GAGGUAGU GUUUGUACAGUU          uagggu  g u
  |||||||| ||||||||||||          ||||||  | a
  uuccguca cagacaugucaa          gucccg  c u
cg        u            ucgaggaauu      -u u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-let-7j

Accession MIMAT0029383
Description Ictalurus punctatus ipu-let-7j mature miRNA
Sequence 1 - UGAGGUAGUUGUUUGUACAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174