miRBase entry: ipu-mir-100-1

Stem-loop ipu-mir-100-1


Accession
MI0024456
Description
Ictalurus punctatus ipu-mir-100-1 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

AACCCGUAGAUCCGAACUUGUGgugacuguccacacaagcuuguaucuauagguauc
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure
--A   C      C   A      g  ac 
   ACC GUAGAU CGA CUUGUG ug  u
   ||| |||||| ||| |||||| ||   
   ugg uaucua guu gaacac ac  g
cua   a      u   c      -  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-100

Accession MIMAT0029385
Description Ictalurus punctatus ipu-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174