Stem-loop ipu-mir-138-1

Accession

MI0024501

Description

Ictalurus punctatus ipu-mir-138-1 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

AGCUGGUGUUGUGAAUCAGGCCGaugucacacgucagcgauaacccggcuauuucacaacaccagggu
..(((((((((((((...(((((.((((.(......).))))...)))))..)))))))))))))...

Structure

-AG             UCA     --a    a ac 
   CUGGUGUUGUGAA   GGCCG   uguc c  g
   |||||||||||||   |||||   |||| |   
   gaccacaacacuu   ucggc   auag g  u
ugg             -ua     cca    c ac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ipu-miR-138

• Accession: MIMAT0029414
• Description: Ictalurus punctatus ipu-miR-138 mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23342099
   Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
   Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
   PLoS One (2013) 8:e54174