miRBase entry: ipu-mir-1388

Stem-loop ipu-mir-1388


Accession
MI0024503
Description
Ictalurus punctatus ipu-mir-1388 precursor miRNA
Gene family
MIPF0000805; mir-1388

Literature search
1 open access papers mention ipu-mir-1388
(1 sentences)

Sequence

aggacuguccaaccugagaaugcuugaguuuuggucaAUCUCAGGUUCGUCAGCCCAUGA
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))....

Structure
---a  a   u c         a  -  uga 
    gg cug c aaccugaga ug cu   g
    || ||| | ||||||||| || ||    
    CC GAC G UUGGACUCU ac gg   u
AGUA  C   U C         A  u  uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-1388

Accession MIMAT0029415
Description Ictalurus punctatus ipu-miR-1388 mature miRNA
Sequence 38 - AUCUCAGGUUCGUCAGCCCAUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174