Stem-loop ipu-mir-199a-1

Accession

MI0024547

Description

Ictalurus punctatus ipu-mir-199a-1 precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

CCCAGUGUUCAGACUACCUGUUCaggaucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    ga 
  CCAGUGU CAGACUAC UGU   UCag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  a
UU       C        -   ugu    au 

Annotation confidence Not enough data

Genome context

Unknown

Mature ipu-miR-199a-5p

• Accession: MIMAT0029450
• Description: Ictalurus punctatus ipu-miR-199a-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUC - 23
• Evidence: experimental ; Illumina [1]

Mature ipu-miR-199a-3p

• Accession: MIMAT0031093
• Description: Ictalurus punctatus ipu-miR-199a-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23342099
   Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
   Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
   PLoS One (2013) 8:e54174