miRBase entry: ipu-mir-221-2

Stem-loop ipu-mir-221-2


Accession
MI0024585
Description
Ictalurus punctatus ipu-mir-221-2 precursor miRNA
Gene family
MIPF0000051; mir-221


Sequence

cccuggcacacaguguauuggucugugugugugugugucuacAGCUACAUUGUCUGCUGGGUUU
.(((((((.(((((((...((.(((((............)))))))))))))).)))))))...

Structure
--c       c       auu  u     ugugu 
   ccuggca acagugu   gg cugug     g
   ||||||| |||||||   || |||||      
   GGGUCGU UGUUACA   UC GAcau     u
UUU       C       ---  -     cugug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ipu-miR-221

Accession MIMAT0029476
Description Ictalurus punctatus ipu-miR-221 mature miRNA
Sequence 43 - AGCUACAUUGUCUGCUGGGUUU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23342099
    Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
    Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
    PLoS One (2013) 8:e54174