Stem-loop ipu-mir-338-1

Accession

MI0024620

Description

Ictalurus punctatus ipu-mir-338-1 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

aacaaucuccugaugcugccugaguguuuuucuuccacUCCAGCAUCAGUGAUUUUGUUG
(((((..(((((((((((...(((((.........)))))))))))))).))..))))).

Structure

-     uc  -         ccu     uuu 
 aacaa  uc cugaugcug   gagug   u
 |||||  || |||||||||   |||||   u
 UUGUU  AG GACUACGAC   CUcac   c
G     UU  U         ---     cuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ipu-miR-338

• Accession: MIMAT0029502
• Description: Ictalurus punctatus ipu-miR-338 mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23342099
   Identification and characterization of microRNAs in channel catfish (Ictalurus punctatus) by using Solexa sequencing technology
   Xu Z, Chen J, Li X, Ge J, Pan J, Xu X
   PLoS One (2013) 8:e54174