Stem-loop sequence mtr-MIR172d

Accession

MI0025218 (change log)

Description

Medicago truncatula miR172d stem-loop

Gene family

MIPF0000035; MIR172

Literature search

7 open access papers mention mtr-MIR172d
(30 sentences)

Stem-loop

        gugu     ag  g                a  -   --uuuau      ucaa 
5' aguca    uugcu  ug agcaucaucaagauuc ca agc       agggcu    a
   |||||    |||||  || |||||||||||||||| || |||       ||||||    u
3' ucagu    aacga  ac ucguaguaguucuaag gu uug       ucccga    c
        aguu     cg  g                a  a   uacuucu      uuaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): contig_53419: 1969-2086 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025218

Mature sequence mtr-miR172d-5p

• Accession: MIMAT0029978
• Sequence: 15 - aguggagcaucaucaagauucaca - 38
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR172d-3p

• Accession: MIMAT0029979
• Sequence: 83 - agaaucuugaugaugcugca - 102
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).