miRBase entry: oar-mir-106b

Stem-loop oar-mir-106b


Accession
MI0025249
Description
Ovis aries oar-mir-106b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
1 open access papers mention oar-mir-106b
(2 sentences)

Sequence

31812 reads, 6806 reads per million, 13 experiments
ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccugugugcuaccgcacuguggguacuugcugcuccagcagg
(((((.(((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...))))).)))))

Structure
     c     -UA       G       A A     guc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagug   c
||||| |||||   ||||||| ||||||| | |||||    
ggacg ccucg   uucaugg ugucacg c aucgu   u
     a     ucg       g       c -     gug 


Annotation confidence Not enough data
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Genome context
chr24: 36244122-36244201 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-106b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-106b

Accession MIMAT0030028
Description Ovis aries oar-miR-106b mature miRNA
Sequence 12 - UAAAGUGCUGACAGUGCAGAU - 32
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161