miRBase entry: oar-mir-200a

Stem-loop oar-mir-200a


Accession
MI0025264
Description
Ovis aries oar-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
7 open access papers mention oar-mir-200a
(11 sentences)

Sequence

23741 reads, 6864 reads per million, 13 experiments
gggccucuguggacaucuuaccggacagugcuggauuucucggcucgacucuAACACUGUCUGGUAACGAUguucaaaggugaccc
((((.(((.(((((((((((((((((((((.((((....(((...))).)))).))))))))))))).)))))))).))).).)))

Structure
   - c   g        -             c    uuuc   g 
ggg c ucu uggacauc uuaccggacagug ugga    ucg  
||| | ||| |||||||| ||||||||||||| ||||    ||| c
ccc g gga acuugUAG AAUGGUCUGUCAC Aucu    agc  
   a u   a        C             A    ---c   u 


Annotation confidence Not enough data
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Genome context
chr12: 49326773-49326858 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-200a

Accession MIMAT0030042
Description Ovis aries oar-miR-200a mature miRNA
Sequence 53 - AACACUGUCUGGUAACGAU - 71
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161