miRBase entry: oar-mir-200b

Stem-loop oar-mir-200b


Accession
MI0025265
Description
Ovis aries oar-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
7 open access papers mention oar-mir-200b
(10 sentences)

Sequence

8710 reads, 2714 reads per million, 13 experiments
ccaucuuacugggcagcauuggauggugucuggucucUAAUACUGCCUGGUAAUGAUGa
.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).

Structure
c    -           c      u  ug 
 cauc uuacugggcag auugga gg  u
 |||| ||||||||||| |||||| ||  c
 GUAG AAUGGUCCGUC UAAUcu cu  u
a    U           A      -  gg 


Annotation confidence Not enough data
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Genome context
chr12: 49327356-49327414 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-200b

Accession MIMAT0030043
Description Ovis aries oar-miR-200b mature miRNA
Sequence 38 - UAAUACUGCCUGGUAAUGAUG - 58
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161