Stem-loop bdi-MIR156e

Accession

MI0025290

Description

Brachypodium distachyon bdi-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156e
(25 sentences)

Sequence

gagauggaggcUGACAGAAGAGAGUGAGCACacauggugccuuucuugcauggugaaucagagagagggagaaagagcguucaugcuugaagcuauguguGCUCACUUCUCUCUCUGUCAGCcauuacuuaca
(((.(((.((((((((((((((((((((((((((((((.((((((((..((.....))..))))))))......((((......))))...))))))))))))))).))))).)))))))))).))))))...

Structure

---   a   a          -     -               ----------------------g        gc  g 
   gag ugg ggcUGACAGA AGAGA GUGAGCACacauggu                       ccuuucuu  au g
   ||| ||| |||||||||| ||||| |||||||||||||||                       ||||||||  || u
   uuc auu cCGACUGUCU UCUCU CACUCGuguguaucg                       ggagagag  ua g
aca   -   a          C     U               aaguucguacuugcgagaaagag        ac  a 

Annotation confidence Not enough data

Genome context

2: 4030451-4030583 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bdi-MIR156e

Mature bdi-miR156e-5p

• Accession: MIMAT0030071
• Description: Brachypodium distachyon bdi-miR156e-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature bdi-miR156e-3p

• Accession: MIMAT0030072
• Description: Brachypodium distachyon bdi-miR156e-3p mature miRNA
• Sequence: 101 - GCUCACUUCUCUCUCUGUCAGC - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443