Stem-loop bdi-MIR156f

Accession

MI0025291

Description

Brachypodium distachyon bdi-MIR156f precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

5 open access papers mention bdi-MIR156f
(25 sentences)

Sequence

ugaguggaagcUGACAGAAGAGAGUGAGCACccaugguguuucguuugcaucaaggacaugccagggagcuaugcguGCUCACUGCUCUAUCUGUCAGCcagccacugau
(.(((((..((((((((((((((((((((((.((((((...((.((.((((.......)))).)).)))))))).))))))))).)))).)))))))))...))))).).

Structure

- g     -aa         -    -         c      guu  g  u    ca 
 u agugg   gcUGACAGA AGAG AGUGAGCAC cauggu   uc uu gcau  a
 | |||||   ||||||||| |||| ||||||||| ||||||   || || ||||  g
 a ucacc   CGACUGUCU UCUC UCACUCGug guaucg   ag ga cgua  g
u g     gac         A    G         c      ---  g  c    ca 

Annotation confidence Not enough data

Genome context

2: 4030679-4030788 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bdi-MIR156f

Mature bdi-miR156f-5p

• Accession: MIMAT0030073
• Description: Brachypodium distachyon bdi-miR156f-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature bdi-miR156f-3p

• Accession: MIMAT0030074
• Description: Brachypodium distachyon bdi-miR156f-3p mature miRNA
• Sequence: 78 - GCUCACUGCUCUAUCUGUCAGC - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443