miRBase entry: bdi-MIR156h

Stem-loop bdi-MIR156h


Accession
MI0025293
Description
Brachypodium distachyon bdi-MIR156h precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
5 open access papers mention bdi-MIR156h
(25 sentences)

Sequence

cggcuugggcggUGACAGAAGAGAGUGAGCACacggccggucgucacacgacggcgccgccgugucgcggccgcguGCUCACUGCUCUUCCUGUCAUCcacuagcucu
.((((.((..((((((((((((((((((((((.(((((((((((...)))))(((((....))))).)))))).))))))))).))))).))))))))..))))))..

Structure
-c    u  gc        -     -         a      ---------------     c 
  ggcu gg  ggUGACAG AAGAG AGUGAGCAC cggccg               gucgu  
  |||| ||  |||||||| ||||| ||||||||| ||||||               ||||| a
  ucga uc  CUACUGUC UUCUC UCACUCGug gccggc               cagca  
uc    -  ac        C     G         c      gcugugccgccgcgg     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
3: 49973597-49973704 [-]

Database links

Mature bdi-miR156h-5p

Accession MIMAT0030077
Description Brachypodium distachyon bdi-miR156h-5p mature miRNA
Sequence 13 - UGACAGAAGAGAGUGAGCAC - 32
Evidence experimental
Illumina [1]

Mature bdi-miR156h-3p

Accession MIMAT0030078
Description Brachypodium distachyon bdi-miR156h-3p mature miRNA
Sequence 77 - GCUCACUGCUCUUCCUGUCAUC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443