miRBase entry: bdi-MIR5185d

Stem-loop bdi-MIR5185d


Accession
MI0025308
Description
Brachypodium distachyon bdi-MIR5185d precursor miRNA
Gene family
MIPF0001246; MIR5185

Literature search
1 open access papers mention bdi-MIR5185d
(1 sentences)

Sequence

gcaaacgggaugcugcgaaagucccgcUUCUAGUUCAUUUUUCAAAUCuuuuauucaaaauuuucuucagaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCgggacuuucgcgggaucccguuugcacc
(((((((((((.(((((((((((((((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).))))))))))))))))))))))))).)))))))))))...

Structure
---           g                         U                     a    c 
   gcaaacgggau cugcgaaagucccgcUUCUAGUUCA UUUUCAAAUCuuuuauucaaa uuuu u
   ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||  
   cguuugcccua ggcgcuuucagggCGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaga u
cca           g                         U                     -    c 


Annotation confidence Not enough data
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Genome context
1: 66835948-66836081 [+]

Database links

Mature bdi-miR5185d-5p

Accession MIMAT0030111
Description Brachypodium distachyon bdi-miR5185d-5p mature miRNA
Sequence 28 - UUCUAGUUCAUUUUUCAAAUC - 48
Evidence experimental
Illumina [1]

Mature bdi-miR5185d-3p

Accession MIMAT0030112
Description Brachypodium distachyon bdi-miR5185d-3p mature miRNA
Sequence 86 - UUUGAGAAUUGAACUAGAAGC - 106
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443