miRBase entry: bdi-MIR5185h

Stem-loop bdi-MIR5185h


Accession
MI0025312
Description
Brachypodium distachyon bdi-MIR5185h precursor miRNA
Gene family
MIPF0001246; MIR5185

Literature search
1 open access papers mention bdi-MIR5185h
(1 sentences)

Sequence

gugcaaacgggaucccgcgaaagucccgcUUCUAGUUCAUUUUUCAAAUCuucuauucaaaauuuugcucagaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCgggacuuucgcaggauc
..........(((((.(((((((((((((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).))))))))))))))))))))))).)))))

Structure
gugcaaacgg     c                       U                     a    g 
          gaucc gcgaaagucccgcUUCUAGUUCA UUUUCAAAUCuucuauucaaa uuuu c
          ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||  
          cuagg cgcuuucagggCGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaga u
----------     a                       U                     -    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
4: 28275129-28275253 [+]

Database links

Mature bdi-miR5185h-5p

Accession MIMAT0030119
Description Brachypodium distachyon bdi-miR5185h-5p mature miRNA
Sequence 30 - UUCUAGUUCAUUUUUCAAAUC - 50
Evidence experimental
Illumina [1]

Mature bdi-miR5185h-3p

Accession MIMAT0030120
Description Brachypodium distachyon bdi-miR5185h-3p mature miRNA
Sequence 88 - UUUGAGAAUUGAACUAGAAGC - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443