miRBase entry: bdi-MIR7708a

Stem-loop bdi-MIR7708a


Accession
MI0025319
Description
Brachypodium distachyon bdi-MIR7708a precursor miRNA
Gene family
MIPF0001801; MIR7708


Sequence

cagaacacaccauccgauuguGUUUUUCCUCAGUACCGUUACAAUuuuguagacauuugcacagcacgccagcuagucuaaaauggaaaguuugacuuuuuuccccucaggauggcgcuuuuugcuugggaggacgacgguuuugcaccauuuuuuucucuaauugaaaauuuggccccaaaagacgguacguaagugucaacuuuggacauuauuugauuaaaaaauuguucagcauuuagccucaaguugaaucacaacaguccacaaaaucauagguuuaaaauucaggucggggguauuguggaaaaaguaacacuuuucguuuuaggccaaguaauguguuguggcaaaugaucacaaaauUGUAAUGGUACUGAACAAAGACGCaauccggcgguguguuucg
..(((((((((.((.((((((((((((..(((((((((((((((((((((.(((((((((((((((((...(((.((((((((((((((((...(((((((((.((((.....((((.....))))...))))(((((.(((((...(((..(((((........)))))..)))......))))).)).)))((((....))))((((((...(((.....)))...))))))(((..((.((((.(.((((((.........((...........))......)))))).).)))).)).))))))))))))...))))))))))))))))..)))..)))))))).))))))).)))))))))))))))))))))))..)))))))))))).)).)))))))))..

Structure
ca         a  c            CC                     a  -       -        cca   -a                uug         cccucaggauggcgcuuuuugcuugggaggacgacgguuuugcaccauuuuuuucucuaauugaaaauuuggccccaaaagacgguacguaagugucaacuuuggacauuauuugauuaaaaaauuguuca   uu  g    a g      cacaacagu  acaa 
  gaacacacc uc gauuguGUUUUU  UCAGUACCGUUACAAUuuugu ga cauuugc acagcacg   gcu  gucuaaaauggaaagu   acuuuuuuc                                                                                                                                   gca  ua ccuc a uugaau         cc    a
  ||||||||| || ||||||||||||  ||||||||||||||||||||| || ||||||| ||||||||   |||  ||||||||||||||||   |||||||||                                                                                                                                   |||  || |||| | ||||||         ||    a
  uuugugugg gg cuaaCGCAGAAA  AGUCAUGGUAAUGUuaaaaca cu guaaacg uguugugu   uga  cggauuuugcuuuuca   ugaaaaagg                                                                                                                                   ugu  au gggg u gacuua         gg    u
gc         c  c            CA                     -  a       g        -aa   ac                caa         -----------------------------------------------------------------------------------------------------------------------------------   -u  g    c g      ---aaauuu  auac 


Annotation confidence Not enough data
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Genome context
4: 31535894-31536302 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7708a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7708a-5p

Accession MIMAT0030133
Description Brachypodium distachyon bdi-miR7708a-5p mature miRNA
Sequence 22 - GUUUUUCCUCAGUACCGUUACAAU - 45
Evidence experimental
Illumina [1]

Mature bdi-miR7708a-3p

Accession MIMAT0030134
Description Brachypodium distachyon bdi-miR7708a-3p mature miRNA
Sequence 367 - UGUAAUGGUACUGAACAAAGACGC - 390
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443