miRBase entry: bdi-MIR7748a

Stem-loop bdi-MIR7748a


Accession
MI0025366
Description
Brachypodium distachyon bdi-MIR7748a precursor miRNA


Sequence

uuuuuacuccAUCCAACAACAAGGGACGUGUUAGcuuuuguuugaccaauacuuugaucauaaauuacuguauuaauaaauaauuauaugacauagauucauauccauuguauuccuacucaagaauauuugcuuauggcuaugauuuugaucacguuagucacauauucuugaaguaauuuguggucaaaggcuuggucaacugaaagcuAAUAUGUUUUCUAUUGUUGGACGGaaggaauauaag
.......(((.((((((((...((((((((((((((((((.((((((((..(((((((((((((((((((((..((((.......((((((.......))))))......))))..)))((((((((((.((((.(((....((((....))))))).)).)).))))))))))))))))))))))))))))..)))))))).))))))))))))))))))...)))))))).)))...........

Structure
----uuuuuac   A        CAA                  u        ua                  guauuaauaaauaauuauaugacauagauucauauccauuguauuccuac          u  -  u   gcua    u 
           ucc UCCAACAA   GGGACGUGUUAGcuuuug uugaccaa  cuuugaucauaaauuacu                                                  ucaagaauau ug cu aug    ugau u
           ||| ||||||||   |||||||||||||||||| ||||||||  ||||||||||||||||||                                                  |||||||||| || || |||    ||||  
           aGG AGGUUGUU   UUUUGUAUAAucgaaagu aacugguu  gaaacugguguuuaauga                                                  aguucuuaua ac ga ugc    acua u
gaauauaagga   C        AUC                  c        cg                  --------------------------------------------------          c  u  u   ----    g 


Annotation confidence Not enough data
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Genome context
1: 51138442-51138688 [+]

Database links

Mature bdi-miR7748a-5p

Accession MIMAT0030236
Description Brachypodium distachyon bdi-miR7748a-5p mature miRNA
Sequence 11 - AUCCAACAACAAGGGACGUGUUAG - 34
Evidence experimental
Illumina [1]

Mature bdi-miR7748a-3p

Accession MIMAT0030237
Description Brachypodium distachyon bdi-miR7748a-3p mature miRNA
Sequence 212 - AAUAUGUUUUCUAUUGUUGGACGG - 235
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443