miRBase entry: bdi-MIR7748b

Stem-loop bdi-MIR7748b


Accession
MI0025372
Description
Brachypodium distachyon bdi-MIR7748b precursor miRNA


Sequence

uccaacaauaugaggcAUGUUAGGAUUCGGUUGACCAAGCauuugaccacaacuuacuuuacgaaugugugacuaaugugaucaaaaucauaaccauaaacaaauauccuugaguaggaacauaaugaauaugauucuaugucauauaauuauauaucaauagaguaauuuguagucaaaguaUUGGUCAAAGAAAAUCUAAUACGCcccauauuguug
..((((((((((.(((.(((((((.(((..((((((((...((((((.((((.((((((((...((((((((...(((((((...(((((((..(((.........((((.....)))).....)))..)))))))....)))))))..))))))))...)))))))).)))).))))))...)))))))).)))..))))))).))).))))))))))

Structure
uc          a   A       -A   GG        GCa      c    c        cga        cua       -caa       ac   aaacaaaua    u 
  caacaauaug ggc UGUUAGG  UUC  UUGACCAA   uuugac acaa uuacuuua   auguguga   augugau    aaucaua  cau         uccu g
  |||||||||| ||| |||||||  |||  ||||||||   |||||| |||| ||||||||   ||||||||   |||||||    |||||||  |||         |||| a
  guuguuauac cCG AUAAUCU  AAG  AACUGGUU   aaacug uguu aaugagau   uauauauu   uauacug    uuaguau  gua         agga g
--          c   C       AA   -A        aug      a    u        aac        -aa       uauc       aa   ----auaca    u 


Annotation confidence Not enough data
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Genome context
3: 16741357-16741575 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7748b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7748b-5p

Accession MIMAT0030248
Description Brachypodium distachyon bdi-miR7748b-5p mature miRNA
Sequence 17 - AUGUUAGGAUUCGGUUGACCAAGC - 40
Evidence experimental
Illumina [1]

Mature bdi-miR7748b-3p

Accession MIMAT0030249
Description Brachypodium distachyon bdi-miR7748b-3p mature miRNA
Sequence 184 - UUGGUCAAAGAAAAUCUAAUACGC - 207
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443