miRBase entry: bdi-MIR7723b

Stem-loop bdi-MIR7723b


Accession
MI0025375
Description
Brachypodium distachyon bdi-MIR7723b precursor miRNA
Gene family
MIPF0001739; MIR7723


Sequence

auuaagaguucuAUUUUGAUACUACUACCUUCAUCAucuccucaugcagcuagaccaacacauugauauccuauuuguaaccccaacaauucuguaacuauuuauagaugaaggauuguugggguuaccgauggauccaauuugguugagcuaucgaagaagaagAUGAAGGUAGUAGUUUCAAAAUGGaaccuucaau
...(((.((((((((((((.(((((((((((((((.(((.((.....((((.((((((...((((..((((.(((.(((((((((((((((((....(((....)))....))))))))))))))))).))))))).)))))))))).)))).....)).))).))))))))))))))).)))))))))))))))....

Structure
-auu   a            U               A   c  caugc    a      cac    au    u   u                 guaa   u 
    aag guucuAUUUUGA ACUACUACCUUCAUC ucu cu     agcu gaccaa   auug  aucc auu guaaccccaacaauucu    cua u
    ||| |||||||||||| ||||||||||||||| ||| ||     |||| ||||||   ||||  |||| ||| |||||||||||||||||    |||  
    uuc caaGGUAAAACU UGAUGAUGGAAGUAg aga ga     ucga uugguu   uaac  uagg uag cauugggguuguuagga    gau u
uaac   -            U               a   a  agcua    g      ---    -c    -   c                 agua   a 


Annotation confidence Not enough data
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Genome context
1: 55109092-55109290 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7723b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7723b-5p

Accession MIMAT0030254
Description Brachypodium distachyon bdi-miR7723b-5p mature miRNA
Sequence 13 - AUUUUGAUACUACUACCUUCAUCA - 36
Evidence experimental
Illumina [1]

Mature bdi-miR7723b-3p

Accession MIMAT0030255
Description Brachypodium distachyon bdi-miR7723b-3p mature miRNA
Sequence 166 - AUGAAGGUAGUAGUUUCAAAAUGG - 189
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443