Stem-loop bdi-MIR7757

Accession

MI0025377

Description

Brachypodium distachyon bdi-MIR7757 precursor miRNA

Gene family

MIPF0002033; MIR7757

Sequence

uggaucaugcuucuauuuauaagcucauugaaguaacucucuccgagcucaaauaggccaauuuuuuguuugugugauaCACAAAACCUUCAGCUACCCACUUCCAUAUCAAAUCAUCUCUcuugguuuucuugucuuuuggaaauauacuuugauaugauaaaagaugagaagguagauccuagcuagaacaacaucauauuaagucuuuagucucaaguaaguccggguaggcuagagaugaaauccaauaggagcuuaacguuguuucagguaguguacaacuuguuaguaaaagaugcuuacuuguagauuaugccaaaccaugaucuauaagucaagucucuuuuacuaauaguuuugauccaccuucucaucuuuaguguuaguuaucauauuuaacuauguauucagaagauuagaagauuaugagAGAUAACUUGAUAUGUAAGUGGGUAGUUGAAUGUUUUGUUUAucaugaaaacaagaaauuagccuacgugagcccggagagaguaacucaaugagcacauaaauagaagcaugauucaaccaauagacaccgaugacgacugugaaggcaaggaaauguauuauu
((((((((((((((((((((..(((((((((.((.((((((((((.(((((..(((((.((((((((((((..((((((.(((((((.(((((((((((((((.((((((((...(((((((.(((((((((.((((((((((.(((((.((.(((((((((((((((((((((((.(((((((.((.(((((((..........((((((((((((..(......)..).)))))))))))....(((....))).......))))))).)).))).....((((.((((((((((((.((((((((((((((((((......)))))))))))))).)))).))))))))))))))))..)))).))))))))))))).........)))))))))).)).))))).)))))))))).))))))))).)))))))...)))))))).))))))))))))))).))))))).))))))..)))))))))))).)))))..))))).)))))))))).)))))))))))..))))))))))))))))))))...........((..(.((....)).).)).................

Structure

-----------------------------------------------                    aa         a  a          a     aa     c            gu      C       C               C        AUC       u         u          a     c  u          ---------             a    cuagcuagaacaacaucauauuaagucuuuagucucaaguaaguccggguaggcuagagaugaaauccaauaggagcuuaacguuguuucagguaguguac    u            u    -              cc 
                                               uggaucaugcuucuauuuau  gcucauuga gu acucucuccg gcuca  uaggc aauuuuuuguuu  gugaua ACAAAAC UUCAGCUACCCACUU CAUAUCAA   AUCUCUc ugguuuucu gucuuuugga auaua uu gauaugauaa         aagaugagaaggu gauc                                                                                                     aacu guuaguaaaaga gcuu acuuguagauuaug  a
                                               ||||||||||||||||||||  ||||||||| || |||||||||| |||||  ||||| ||||||||||||  |||||| ||||||| ||||||||||||||| ||||||||   ||||||| ||||||||| |||||||||| ||||| || ||||||||||         ||||||||||||| ||||                                                                                                     |||| |||||||||||| |||| ||||||||||||||   
                                               acuuaguacgaagauaaaua  cgaguaacu ca ugagagaggc cgagu  auccg uuaaagaacaaa  uacuAU UGUUUUG AAGUUGAUGGGUGAA GUAUAGUU   UAGAgag auuagaaga uagaagacuu uguau aa uuauacuauu         uucuacucuucca cuag                                                                                                     uuga uaaucauuuucu ugaa ugaauaucuaguac  a
uuauuauguaaaggaacggaagugucagcaguagccacagauaacca                    ca         -  a          c     gc     a            ag      U       U               U        CAA       u         u          a     c  u          gauugugau             c    ---------------------------------------------------------------------------------------------------uu    -            c    c              ca 

Annotation confidence Not enough data

Genome context

2: 57745334-57745931 [+]

Mature bdi-miR7757-5p.1

• Accession: MIMAT0030258
• Description: Brachypodium distachyon bdi-miR7757-5p.1 mature miRNA
• Sequence: 80 - CACAAAACCUUCAGCUACCCA - 100
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7757-5p.2

• Accession: MIMAT0030259
• Description: Brachypodium distachyon bdi-miR7757-5p.2 mature miRNA
• Sequence: 101 - CUUCCAUAUCAAAUCAUCUCU - 121
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7757-3p.2

• Accession: MIMAT0030260
• Description: Brachypodium distachyon bdi-miR7757-3p.2 mature miRNA
• Sequence: 434 - AGAUAACUUGAUAUGUAAGUG - 454
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7757-3p.1

• Accession: MIMAT0030261
• Description: Brachypodium distachyon bdi-miR7757-3p.1 mature miRNA
• Sequence: 455 - GGUAGUUGAAUGUUUUGUUUA - 475
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443