miRBase entry: bdi-MIR7783

Stem-loop bdi-MIR7783


Accession
MI0025405
Description
Brachypodium distachyon bdi-MIR7783 precursor miRNA


Sequence

ccaucgugaacugcuggucGCGUCUACUUGGUAUCCAAGCUUAugauaucuguuaugccugauuccguuggguuauguucuuugguggaguuaaaugucagcaauggccaaaugcuucccuccacuagaaggcggucauguacaacagagaucauaAGCUCUGAUACCAUGUGGAUGAGAuugacaauuc
.......(((.((.(((((.(((((((.(((((((..((((((((((.((((((.(((.(((..(((((........((((.(((.(((((.....((((....)))).....)))))...)))..)))))))))))).))).)))))).))))))))))..))))))).))))))).))))).)).)))

Structure
ccaucgu   c  c     G       U       CA          a      a   c   uu     ggguuaug    -u   --u     uaaau    g 
       gaa ug ugguc CGUCUAC UGGUAUC  AGCUUAugau ucuguu ugc uga  ccguu        uucu  ugg   ggagu     guca c
       ||| || ||||| ||||||| |||||||  |||||||||| |||||| ||| |||  |||||        ||||  |||   |||||     ||||  
       cuu ac guuAG GUAGGUG ACCAUAG  UCGAauacua agacaa aug acu  ggcgg        aaga  acc   cuucg     cggu a
-------   a  a     A       U       UC          g      c   u   --     --------    uc   ucc     uaaac    a 


Annotation confidence Not enough data
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Genome context
2: 14480283-14480472 [-]

Database links

Mature bdi-miR7783-5p

Accession MIMAT0030320
Description Brachypodium distachyon bdi-miR7783-5p mature miRNA
Sequence 20 - GCGUCUACUUGGUAUCCAAGCUUA - 43
Evidence experimental
Illumina [1]

Mature bdi-miR7783-3p

Accession MIMAT0030321
Description Brachypodium distachyon bdi-miR7783-3p mature miRNA
Sequence 157 - AGCUCUGAUACCAUGUGGAUGAGA - 180
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443