Stem-loop sequence ptc-MIR6462f

AccessionMI0025476 (change log)
DescriptionPopulus trichocarpa miR6462f stem-loop
Gene family MIPF0001393; MIR6462
Literature search

1 open access papers mention ptc-MIR6462f
(2 sentences)

Stem-loop 
   gg       ag            g           uacagu   a      agaaa 
5'   gaucggc  gagacaaaaaug cauaagagagg      ggg ggcagg     g
     |||||||  |||||||||||| |||||||||||      ||| ||||||     a
3'   cuggccg  cucuguuuuugc guauucucucu      ccc ccgucu     c
   ca       cu            -           -uucuu   a      auaac
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000341.2: 24270440-24270552 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR6462f
ptc-MIR6457bCM000341.2: 24262248-24262423 [+]
ptc-MIR6462dCM000341.2: 24265932-24266064 [+]
ptc-MIR6462eCM000341.2: 24266243-24266355 [+]
ptc-MIR6462bCM000341.2: 24270125-24270257 [+]
ptc-MIR6462fCM000341.2: 24270440-24270552 [+]
ptc-MIR6462cCM000341.2: 24280110-24280242 [+]
Database links

Mature sequence ptc-miR6462f

Accession MIMAT0030376
Sequence

84 -  

ucuuaugcguuuuugucucu

 - 103

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).