Stem-loop sequence ptc-MIR1444d

Accession

MI0025485 (change log)

Description

Populus trichocarpa miR1444d stem-loop

Gene family

MIPF0000461; MIR1444

Literature search

3 open access papers mention ptc-MIR1444d
(70 sentences)

Stem-loop

   g      a      cg    c        a      cauuua 
5'  uuuauc cucgaa  uuga cgaaugug augaaa      a
    |||||| ||||||  |||| |||||||| ||||||      c
3'  aaauag gagcuu  aacu gcuuauac uacuuu      c
   a      g      au    a        a      auacua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000346.2: 11417598-11417684 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR1444d

• ptc-MIR1444b: CM000346.2: 11417599-11417683 [+]
• ptc-MIR1444d: CM000346.2: 11417598-11417684 [-]

Database links

• miRBase Tracker:MI0025485

Mature sequence ptc-miR1444d

• Accession: MIMAT0030385
• Sequence: 11 - cgaacguugaccgaaugugaa - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).