Stem-loop sequence ptc-MIR3627b

Accession

MI0025491 (change log)

Description

Populus trichocarpa miR3627b stem-loop

Literature search

1 open access papers mention ptc-MIR3627b
(3 sentences)

Stem-loop

   g     u   u          a      gc     aaccauggucauaucauauauaucauauggcaagua 
5'  ggggu ucu gucgcaggag gauggc  uagcu                                    u
    ||||| ||| |||||||||| ||||||  |||||                                    u
3'  uccca agg cagcguccuc cuaccg  aucga                                    a
   g     c   u          -      aa     cucgauagaaaugucgacuauguauguuucucguuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000353.2: 10888890-10889033 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025491

Mature sequence ptc-miR3627b

• Accession: MIMAT0030391
• Sequence: 11 - ugucgcaggagagauggcgcua - 32
• Evidence: experimental; Illumina [1]

References

1. PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).