miRBase entry: bta-mir-6516

Stem-loop bta-mir-6516


Accession
MI0025538
Description
Bos taurus bta-mir-6516 precursor miRNA
Gene family
MIPF0001672; mir-6516

Literature search
1 open access papers mention bta-mir-6516
(2 sentences)

Sequence

38 reads, 100 reads per million, 21 experiments
UUUGCAGUAACAGGUGUGAACauucuagcagcaguuugaugaucauguaugauacugcaaac
(((((((((.((..(((((.((((..(((....))).)))).)))))..)).))))))))).

Structure
-         A  GG     A    cu   a 
 UUUGCAGUA CA  UGUGA Cauu  agc g
 ||||||||| ||  ||||| ||||  |||  
 aaacgucau gu  guacu guag  uug c
c         a  au     a    -u   a 


Annotation confidence Not enough data
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Genome context
chr19: 55638811-55638872 [+]

Database links

Mature bta-miR-6516

Accession MIMAT0030443
Description Bos taurus bta-miR-6516 mature miRNA
Sequence 1 - UUUGCAGUAACAGGUGUGAAC - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23472090
    Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection
    Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ
    PLoS One (2013) 8:e57543