Stem-loop sequence bta-mir-2285ae

Accession

MI0025543 (change log)

Description

Bos taurus miR-2285ae stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285ae
(15 sentences)

Stem-loop

   ---         a                 g 
5'    agaaaguuc uuuagguuuuucuauag a
      ||||||||| |||||||||||||||||  
3'    uuuuucagg aaguucaaaaagguguc u
   cgg         c                 g 

Deep sequencing

187 reads, 0 reads per million, 46 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr8: 74016989-74017049 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000020616 ; DOCK5-201; intron 20

Database links

• miRBase Tracker:MI0025543

Mature sequence bta-miR-2285ae

• Accession: MIMAT0030448
• Sequence: 1 - agaaaguucauuuagguuuuuc - 22
• Deep sequencing: 59 reads, 32 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285ae

References

1. PMID:23472090 "Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection" Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ PLoS One. 8:e57543(2013).