Stem-loop stu-MIR7981

Accession

MI0025757

Description

Solanum tuberosum stu-MIR7981 precursor miRNA

Sequence

GUUAAUUAAACUAUGGUCCUAUUAcccccucaaauccauuuuuuuuguaauuuuauacaccuuuuugacuuacguggcauccaaacaucuuccaugugccucaacuauguggaaucauggagugugccacguaagucaaaagguguauaaaauuccaaaaaaaaaaaaagaguuugaagagguaAUAGGACUUUAGUUUAGUUAAGGU
.((((((((((((.((((((((((((.(.((((((.(.(((((((((.(((((((((((((((((.((((((((((((((.(...(((.(((((((((.......)))))))))..)))..).))))))))))))))))))))))))))))))).))))))))).....).)))))).).)))))))))))).))))))))))))...

Structure

--G            U            c c      c ----a         u                 u              c aaa   -c         cc 
   UUAAUUAAACUA GGUCCUAUUAcc c ucaaau c     uuuuuuuug aauuuuauacaccuuuu gacuuacguggcau c   cau  uuccaugug  u
   |||||||||||| |||||||||||| | |||||| |     ||||||||| ||||||||||||||||| |||||||||||||| |   |||  |||||||||  c
   AAUUGAUUUGAU UCAGGAUAaugg g aguuug g     aaaaaaaac uuaaaauauguggaaaa cugaaugcaccgug g   gua  aagguguau  a
UGG            U            a a      a aaaaa         c                 -              u -ag   cu         ca 

Annotation confidence Not enough data

Genome context

JH138445.1: 138080-138287 [+]

Mature stu-miR7981-5p

• Accession: MIMAT0031182
• Description: Solanum tuberosum stu-miR7981-5p mature miRNA
• Sequence: 1 - GUUAAUUAAACUAUGGUCCUAUUA - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR7981-3p

• Accession: MIMAT0030848
• Description: Solanum tuberosum stu-miR7981-3p mature miRNA
• Sequence: 185 - AUAGGACUUUAGUUUAGUUAAGGU - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233