miRBase entry: stu-MIR7996c

Stem-loop stu-MIR7996c


Accession
MI0025793
Description
Solanum tuberosum stu-MIR7996c precursor miRNA
Gene family
MIPF0001691; MIR7996

Literature search
1 open access papers mention stu-MIR7996c
(1 sentences)

Sequence

AUGUGGUACAUAUGAAAUUUGAAAuuaaucaauuuuuuaguuuguuuuuauauauuuuaaguugcuaauuauuuguauuuagaguauguuuuacguaaauauauuagaaaucacaauaauuaacaaguuaauauaaaaaaaaacuuauaaaaaauucauugacuuuugaaauuucauuuguaucacauaa
((((((((((.(((((((((.((((((((.(((((((((((((.(((((((((....(((.(((.((((((((.((((((..(((((((((.....)))))))))..)))).)))))))))).))).)))))))))))).)))))...)))))))).)))))..))).))))))))).))))))))))..

Structure
--          U         G   --     c        ---     g         auuu   g   c        u  -    ag         u 
  AUGUGGUACA AUGAAAUUU AAA  uuaau aauuuuuu   aguuu uuuuuauau    uaa uug uaauuauu gu auuu  aguauguuu a
  |||||||||| ||||||||| |||  ||||| ||||||||   ||||| |||||||||    ||| ||| |||||||| || ||||  ||||||||| c
  uacacuaugu uacuuuaaa uuu  aguua uuaaaaaa   ucaaa aaaaauaua    auu aac auuaauaa ca uaaa  uuauauaaa g
aa          u         g   uc     c        uau     a         ----   g   a        -  c    ga         u 


Annotation confidence Not enough data
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Genome context
JH138313.1: 61352-61541 [+]

Database links

Mature stu-miR7996c

Accession MIMAT0030884
Description Solanum tuberosum stu-miR7996c mature miRNA
Sequence 1 - AUGUGGUACAUAUGAAAUUUGAAA - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233