miRBase entry: stu-MIR399d

Stem-loop stu-MIR399d


Accession
MI0025876
Description
Solanum tuberosum stu-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention stu-MIR399d
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaccuauauauuuaagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((.((.........)).)).)))))))).))))))..))))..

Structure
--    UA      A        -  c  aua 
  GGGC  CUCUCU UUGGCAUG ca cu   u
  ||||  |||||| |||||||| || ||   a
  CCCG  GAGAGG AACCGUac gu ga   u
GU    UC      A        a  c  auu 


Annotation confidence Not enough data
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Genome context
JH137943.1: 1350997-1351060 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from stu-MIR399d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR399d-5p

Accession MIMAT0030967
Description Solanum tuberosum stu-miR399d-5p mature miRNA
Sequence 1 - GGGCUACUCUCUAUUGGCAUG - 21
Evidence experimental
Illumina [1]

Mature stu-miR399d-3p

Accession MIMAT0031230
Description Solanum tuberosum stu-miR399d-3p mature miRNA
Sequence 44 - UGCCAAAGGAGAGCUGCCCUG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233