Stem-loop stu-MIR399f

Accession

MI0025878

Description

Solanum tuberosum stu-MIR399f precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

5 open access papers mention stu-MIR399f
(13 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaauuguauauuucagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((.(((.......))).)).)))))))).))))))..))))..

Structure

--    UA      A        -  a   ua 
  GGGC  CUCUCU UUGGCAUG ca uug  u
  ||||  |||||| |||||||| || |||  a
  CCCG  GAGAGG AACCGUac gu gac  u
GU    UC      A        a  c   uu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1348794-1348857 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from stu-MIR399f

Mature stu-miR399f-5p

• Accession: MIMAT0030969
• Description: Solanum tuberosum stu-miR399f-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399f-3p

• Accession: MIMAT0031232
• Description: Solanum tuberosum stu-miR399f-3p mature miRNA
• Sequence: 44 - UGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233