miRBase entry: stu-MIR164

Stem-loop stu-MIR164


Accession
MI0025882
Description
Solanum tuberosum stu-MIR164 precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
7 open access papers mention stu-MIR164
(47 sentences)

Sequence

UGGAGAAGCAGGGCACAUGCUgaauuacuugaaacuuugauuauucaagaauuuugCAUGUGCUCUAGCUCUCCAGC
((((((.(((((((((((((.(((((.((((((..........))))))))))).))))))))))).))))))))..

Structure
--      A  -           U     a      acuu 
  UGGAGA GC AGGGCACAUGC gaauu cuugaa    u
  |||||| || ||||||||||| ||||| ||||||     
  ACCUCU CG UCUCGUGUACg uuuaa gaacuu    g
CG      -  A           u     -      auua 


Annotation confidence Not enough data
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Genome context
JH138033.1: 603264-603340 [+]

Database links

Mature stu-miR164-5p

Accession MIMAT0031235
Description Solanum tuberosum stu-miR164-5p mature miRNA
Sequence 1 - UGGAGAAGCAGGGCACAUGCU - 21
Evidence experimental
Illumina [1]

Mature stu-miR164-3p

Accession MIMAT0030973
Description Solanum tuberosum stu-miR164-3p mature miRNA
Sequence 57 - CAUGUGCUCUAGCUCUCCAGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233