miRBase entry: stu-MIR171b

Stem-loop stu-MIR171b


Accession
MI0025931
Description
Solanum tuberosum stu-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
6 open access papers mention stu-MIR171b
(31 sentences)

Sequence

AGAUAUUGAUGUGGCUCAAUCugaagacauggcuaaauauguaauuagccaugugauuuuggaUUGAGCCGCGUCAAUAUCUCU
((((((((((((((((((((((((((((((((((((........))))))))))..))))))))))))))))))))))))))..

Structure
--                          --          aua 
  AGAUAUUGAUGUGGCUCAAUCugaag  acauggcuaa   u
  ||||||||||||||||||||||||||  ||||||||||    
  UCUAUAACUGCGCCGAGUUagguuuu  uguaccgauu   g
UC                          ag          aau 


Annotation confidence Not enough data
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Genome context
JH138432.1: 116543-116626 [+]

Database links

Mature stu-miR171b-5p

Accession MIMAT0031247
Description Solanum tuberosum stu-miR171b-5p mature miRNA
Sequence 1 - AGAUAUUGAUGUGGCUCAAUC - 21
Evidence experimental
Illumina [1]

Mature stu-miR171b-3p

Accession MIMAT0031248
Description Solanum tuberosum stu-miR171b-3p mature miRNA
Sequence 64 - UUGAGCCGCGUCAAUAUCUCU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233