miRBase entry: stu-MIR166c

Stem-loop stu-MIR166c


Accession
MI0025934
Description
Solanum tuberosum stu-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
7 open access papers mention stu-MIR166c
(29 sentences)

Sequence

GGAAUGUUGUUUGGCUCGAGGccaccaacuucaucuaauguaagcaacucuuguuagugucgUCGGACCAGGCUUCAUUCCCC
((((((..((((((.((((.(.(((.(((.......................))).))).).)))).))))))..))))))..

Structure
--      UU      C    G c   c   uucaucuaau 
  GGAAUG  GUUUGG UCGA G cac aac          g
  ||||||  |||||| |||| | ||| |||          u
  CCUUAC  CGGACC GGCU c gug uug          a
CC      UU      A    g u   a   uucucaacga 


Annotation confidence Not enough data
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Genome context
JH137934.1: 464574-464656 [+]

Database links

Mature stu-miR166c-5p

Accession MIMAT0031252
Description Solanum tuberosum stu-miR166c-5p mature miRNA
Sequence 1 - GGAAUGUUGUUUGGCUCGAGG - 21
Evidence experimental
Illumina [1]

Mature stu-miR166c-3p

Accession MIMAT0031253
Description Solanum tuberosum stu-miR166c-3p mature miRNA
Sequence 63 - UCGGACCAGGCUUCAUUCCCC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233