miRBase entry: stu-MIR172a

Stem-loop stu-MIR172a


Accession
MI0025959
Description
Solanum tuberosum stu-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
12 open access papers mention stu-MIR172a
(52 sentences)

Sequence

GUAGCAUAAUCAAGAUUCACAugaaaaguugcaaauuuguuauauaauugaugaaauuaauggcuagcuauuugaaauucaugAGAAUCUUGAUGAUGCUGCAU
(((((((.((((((((((.(((((...(((.(((((..(((((.(((((.....)))))))))).....))))).)))))))).)))))))))).)))))))..

Structure
--       A          A     aaa   g     ---uu     a     g 
  GUAGCAU AUCAAGAUUC CAuga   guu caaau     guuau uaauu a
  ||||||| |||||||||| |||||   ||| |||||     ||||| ||||| u
  CGUCGUA UAGUUCUAAG guacu   uaa guuua     cggua auuaa g
UA       G          A     ---   a     ucgau     -     a 


Annotation confidence Not enough data
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Genome context
JH137880.1: 29806-29909 [-]

Database links

Mature stu-miR172a-5p

Accession MIMAT0031290
Description Solanum tuberosum stu-miR172a-5p mature miRNA
Sequence 1 - GUAGCAUAAUCAAGAUUCACA - 21
Evidence experimental
Illumina [1]

Mature stu-miR172a-3p

Accession MIMAT0031291
Description Solanum tuberosum stu-miR172a-3p mature miRNA
Sequence 84 - AGAAUCUUGAUGAUGCUGCAU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233