Stem-loop stu-MIR167c

Accession

MI0025967

Description

Solanum tuberosum stu-MIR167c precursor miRNA

Literature search

3 open access papers mention stu-MIR167c
(7 sentences)

Sequence

UGAAGCUGCCAGCAUGAUCUAaacuuggccacacuuauaaagaaaaaaaaugggugacuaagguuaGGUCAUGCUCGGACAGCCUCACU
(((.(((((((((((((((((..(((((...(((((((...........))))))).)))))..))))))))))).)).)))).)))..

Structure

--   A    -  -           aa     cca       aaag 
  UGA GCUG CC AGCAUGAUCUA  cuugg   cacuuau    a
  ||| |||| || |||||||||||  |||||   |||||||    a
  ACU CGAC GG UCGUACUGGau  gaauc   gugggua    a
UC   C    A  C           ug     --a       aaaa 

Annotation confidence Not enough data

Genome context

JH137901.1: 1246472-1246560 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR167c

Mature stu-miR167c-5p

• Accession: MIMAT0031303
• Description: Solanum tuberosum stu-miR167c-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR167c-3p

• Accession: MIMAT0031304
• Description: Solanum tuberosum stu-miR167c-3p mature miRNA
• Sequence: 67 - GGUCAUGCUCGGACAGCCUCACU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233