Stem-loop stu-MIR393

Accession

MI0025978

Description

Solanum tuberosum stu-MIR393 precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

2 open access papers mention stu-MIR393
(13 sentences)

Sequence

UCCAAAGGGAUCGCAUUGAUCCugugucccaaauuaauuaacuggggucuaugggAUCAUGCGAUCUCUUCGGAAU
(((.((((((((((((.((((((((((((((...........)))))..))))))))))))))))))))).)))..

Structure

--   A            U         --     aauu 
  UCC AAGGGAUCGCAU GAUCCugug  uccca    a
  ||| |||||||||||| |||||||||  |||||    a
  AGG UUCUCUAGCGUA CUAggguau  ggggu    u
UA   C            -         cu     caau 

Annotation confidence Not enough data

Genome context

JH137943.1: 172773-172848 [+]

Mature stu-miR393-5p

• Accession: MIMAT0031324
• Description: Solanum tuberosum stu-miR393-5p mature miRNA
• Sequence: 1 - UCCAAAGGGAUCGCAUUGAUCC - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR393-3p

• Accession: MIMAT0031325
• Description: Solanum tuberosum stu-miR393-3p mature miRNA
• Sequence: 56 - AUCAUGCGAUCUCUUCGGAAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233