Stem-loop stu-MIR396

Accession

MI0025984

Description

Solanum tuberosum stu-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

4 open access papers mention stu-MIR396
(6 sentences)

Sequence

UUCCACAGCUUUCUUGAACUUcuucuugcuaaauuuugaucucuaaauugauaauuuugagaugaaauuuuugaagcuaugaaaGUCCAAGAAAGCUGUGGGAAA
((((((((((((((((.((((......((((((.(((.(((((.(((((...))))).))))).))).)))...))).....)))).))))))))))))))))..

Structure

--                A    cuucuu   ---   u   g     u     g 
  UUCCACAGCUUUCUUG ACUU      gcu   aaa uuu aucuc aaauu  
  |||||||||||||||| ||||      |||   ||| ||| ||||| ||||| a
  AGGGUGUCGAAAGAAC UGaa      cga   uuu aaa uagag uuuaa  
AA                C    -aguau   agu   u   g     u     u 

Annotation confidence Not enough data

Genome context

JH138058.1: 516359-516463 [+]

Mature stu-miR396-5p

• Accession: MIMAT0031335
• Description: Solanum tuberosum stu-miR396-5p mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUU - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR396-3p

• Accession: MIMAT0031336
• Description: Solanum tuberosum stu-miR396-3p mature miRNA
• Sequence: 85 - GUCCAAGAAAGCUGUGGGAAA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233