Stem-loop stu-MIR397

Accession

MI0025987

Description

Solanum tuberosum stu-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

4 open access papers mention stu-MIR397
(8 sentences)

Sequence

AUUGAGUGCAGCGUUGAUGACauauuugagaauuucuguauuuuggccuuucucauuuuuCAUCAACGCUACACUCAAUCA
((((((((.(((((((((((...(..((((((...(((.....)))...))))))..).))))))))))).))))))))..

Structure

--        C           Cau uu      uuu   u 
  AUUGAGUG AGCGUUGAUGA   a  ugagaa   cug a
  |||||||| |||||||||||   |  ||||||   ||| u
  UAACUCAC UCGCAACUACu   u  acucuu   ggu u
AC        A           --u uu      ucc   u 

Annotation confidence Not enough data

Genome context

JH138102.1: 591745-591825 [+]

Mature stu-miR397-5p

• Accession: MIMAT0031341
• Description: Solanum tuberosum stu-miR397-5p mature miRNA
• Sequence: 1 - AUUGAGUGCAGCGUUGAUGAC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR397-3p

• Accession: MIMAT0031342
• Description: Solanum tuberosum stu-miR397-3p mature miRNA
• Sequence: 61 - CAUCAACGCUACACUCAAUCA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233