miRBase entry: stu-MIR156j

Stem-loop stu-MIR156j


Accession
MI0025995
Description
Solanum tuberosum stu-MIR156j precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
9 open access papers mention stu-MIR156j
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguguuuucuggcaugauguuuauauuuaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACC
(((((((((((((((((((((((((((...(((.(((((((.........))))))).))))))))))))))))))).)))).)))))))..

Structure
--       -    -                guu   u       ugu 
  UGACAGA AGAG AGUGAGCACacauggu   uuc ggcauga   u
  ||||||| |||| ||||||||||||||||   ||| |||||||   u
  ACUGUCU UCUC UCACUCGuguguauca   aag ucguauu   a
CC       A    G                ---   u       uau 


Annotation confidence Not enough data
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Genome context
JH137923.1: 550610-550701 [+]

Database links

Mature stu-miR156j-5p

Accession MIMAT0031355
Description Solanum tuberosum stu-miR156j-5p mature miRNA
Sequence 1 - UGACAGAAGAGAGUGAGCAC - 20
Evidence experimental
Illumina [1]

Mature stu-miR156j-3p

Accession MIMAT0031356
Description Solanum tuberosum stu-miR156j-3p mature miRNA
Sequence 71 - GCUCACUGCUCUAUCUGUCACC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233