Stem-loop stu-MIR156k

Accession

MI0025996

Description

Solanum tuberosum stu-MIR156k precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156k
(22 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacaugguguuuucuagcaugauguuuacaugcuugaaacuauguguGCUCACUGCUCUAUCUGUCACC
(((((((((((((((((((((((((((...(((.((((((.......)))))).))))))))))))))))))).)))).)))))))..

Structure

--       -    -                guu   u      au 
  UGACAGA AGAG AGUGAGCACacauggu   uuc agcaug  g
  ||||||| |||| ||||||||||||||||   ||| ||||||  u
  ACUGUCU UCUC UCACUCGuguguauca   aag ucguac  u
CC       A    G                ---   u      au 

Annotation confidence Not enough data

Genome context

JH137923.1: 347706-347793 [-]

Mature stu-miR156k-5p

• Accession: MIMAT0031357
• Description: Solanum tuberosum stu-miR156k-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR156k-3p

• Accession: MIMAT0031358
• Description: Solanum tuberosum stu-miR156k-3p mature miRNA
• Sequence: 67 - GCUCACUGCUCUAUCUGUCACC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233