miRBase entry: stu-MIR169d

Stem-loop stu-MIR169d


Accession
MI0026000
Description
Solanum tuberosum stu-MIR169d precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention stu-MIR169d
(6 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUgcaccauauuugaaaagggguuucauauguccuuucauucuuggggucaaGCAGGUCAUCUUUAGCUAACU
((((.(((((((((((((.(((.(((....(((((.(((..........))))))))....))).).)).))))))))))))).))))...

Structure
---    C             C  - a   uauu     a   guuu 
   UAGC AAGGAUGACUUGC Ug c cca    ugaaa ggg    c
   |||| ||||||||||||| || | |||    ||||| |||     
   AUCG UUUCUACUGGACG ac g ggu    acuuu ccu    a
UCA    A             a  u g   ucuu     -   guau 


Annotation confidence Not enough data
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Genome context
JH138085.1: 294901-294991 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from stu-MIR169d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR169d-5p

Accession MIMAT0031365
Description Solanum tuberosum stu-miR169d-5p mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCU - 20
Evidence experimental
Illumina [1]

Mature stu-miR169d-3p

Accession MIMAT0031366
Description Solanum tuberosum stu-miR169d-3p mature miRNA
Sequence 71 - GCAGGUCAUCUUUAGCUAACU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233