miRBase entry: stu-MIR169h

Stem-loop stu-MIR169h


Accession
MI0026004
Description
Solanum tuberosum stu-MIR169h precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention stu-MIR169h
(6 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUauguucaaaaccaauuuugaaauugguaauuauauuauauaggcagucaucuugggcuauc
(((((.(((((((((.((((((((.....(((((((....))))))).........))))))))))))))))).)))))..

Structure
--     A         U        ----ucaaa       u 
  UAGCC AGGAUGACU GCCUaugu         accaauu u
  ||||| ||||||||| ||||||||         |||||||  
  aucgg uucuacuga cggauaua         ugguuaa g
cu     g         -        uuauauuaa       a 


Annotation confidence Not enough data
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Genome context
JH138318.1: 155222-155302 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR169h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR169h

Accession MIMAT0031372
Description Solanum tuberosum stu-miR169h mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233