miRBase entry: mmu-mir-142b

Stem-loop mmu-mir-142b


Accession
MI0026028
Symbol
MGI: Mir142b
Description
Mus musculus mmu-mir-142b precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
166 open access papers mention mmu-mir-142b
(2029 sentences)

Sequence

1954265 reads, 2 reads per million, 102 experiments
gcguggucuccgaagcccacagugcacucaUCCAUAAAGUAGGAAACACUacacccuccagugcuguuaguagugcuuucuacuuuaugggugacugcacugucugucuguccac
..((((.(.....((...((((((((.((((((((((((((((((.((((((.................)))))).)))))))))))))))))).))))))))))....).))))

Structure
gc    u uccga  ccc        c                  A      acccucc 
  gugg c     ag   acagugca ucaUCCAUAAAGUAGGAA CACUac       a
  |||| |     ||   |||||||| |||||||||||||||||| ||||||       g
  cacc g     uc   ugucacgu aguggguauuucaucuuu gugaug       u
--    u -ucug  ---        c                  c      auugucg 


Annotation confidence Not enough data
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Genome context
chr11: 87756841-87756955 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-142b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-142b

Accession MIMAT0031402
Description Mus musculus mmu-miR-142b mature miRNA
Sequence 31 - UCCAUAAAGUAGGAAACACU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23185045
    Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2
    "Polikepahad S, Corry DB"
    "Nucleic Acids Res (2013) 41:1164-1177