Stem-loop sequence ppe-MIR156f

Accession

MI0026061 (change log)

Description

Prunus persica miR156f stem-loop

Gene family

MIPF0000008; MIR156

Literature search

14 open access papers mention ppe-MIR156f
(60 sentences)

Stem-loop

      u     a     cau   ---   uuu  c         -              u  --   a    a  aa 
5' agc aguag ggagg   agg   uga   ug ugacagaag auagagagcacaga gg  uga augc ug  c
   ||| ||||| |||||   |||   |||   || ||||||||| |||||||||||||| ||  ||| |||| ||  a
3' ucg uuauc ccucc   ucc   acu   ac acugucuuc uaucucucguguuu cc  acu uacg ac  a
      u     c     -au   ccu   ucc  u         g              -  ua   c    -  gg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG3: 16336244-16336387 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR156f

• ppe-MIR156f: chrG3: 16336244-16336387 [+]
• ppe-MIR156h: chrG3: 16336810-16336918 [+]

Database links

• miRBase Tracker:MI0026061

Mature sequence ppe-miR156f

• Accession: MIMAT0031433
• Sequence: 31 - ugacagaagauagagagcac - 50
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).