Stem-loop sequence ppe-MIR156h

Accession

MI0026063 (change log)

Description

Prunus persica miR156h stem-loop

Gene family

MIPF0000008; MIR156

Literature search

14 open access papers mention ppe-MIR156h
(60 sentences)

Stem-loop

       uu  u         -              u  -   a    ---a  ga   c 
5' aggu  ug ugacagaag auagagagcacaga ga aga augc    ug  cau g
   ||||  || ||||||||| |||||||||||||| || ||| ||||    ||  |||  
3' ucca  ac acugucuuc uaucucucguguuu cu ucu uacg    ac  gua a
       -c  u         g              c  c   c    acgg  -g   c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG3: 16336810-16336918 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR156h

• ppe-MIR156f: chrG3: 16336244-16336387 [+]
• ppe-MIR156h: chrG3: 16336810-16336918 [+]

Database links

• miRBase Tracker:MI0026063

Mature sequence ppe-miR156h

• Accession: MIMAT0031435
• Sequence: 9 - uugacagaagauagagagcac - 29
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).