Stem-loop sequence ppe-MIR167a

Accession

MI0026078 (change log)

Description

Prunus persica miR167a stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

10 open access papers mention ppe-MIR167a
(23 sentences)

Stem-loop

      a   --     aa     a    - -c              uu      agauaucauacauauau 
5' guc caa  gggaa  aguga gcug c  agcaugaucuagcu  gguuac                 c
   ||| |||  |||||  ||||| |||| |  ||||||||||||||  ||||||                  
3' cag guu  cccuu  ucacu cgac g  ucguacuggaucga  ccaaug                 u
      g   ua     cc     c    a uc              uc      auuacuugauagauaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG8: 20761711-20761846 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR167a

• ppe-MIR167a: chrG8: 20761711-20761846 [-]
• ppe-MIR167b: chrG8: 20759419-20759555 [-]

Database links

• miRBase Tracker:MI0026078

Mature sequence ppe-miR167a

• Accession: MIMAT0031450
• Sequence: 17 - ugaagcugccagcaugaucua - 37
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).