Stem-loop sequence ppe-MIR167b

Accession

MI0026079 (change log)

Description

Prunus persica miR167b stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

10 open access papers mention ppe-MIR167b
(23 sentences)

Stem-loop

      uuu c   c  c      a  -ac      u           g        aaa   c    uugg 
5' ggu   g uug uu ucgugg cc   cagcag ugaagcugcca caugaucu   cuu ccuu    c
   |||   | ||| || |||||| ||   |||||| ||||||||||| ||||||||   ||| ||||     
3' uca   c agc aa agcacu gg   guuguc acuucgauggu guacuaga   gaa ggag    c
      uuu a   -  a      a  gca      c           -        cua   a    uuga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG8: 20759419-20759555 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR167b

• ppe-MIR167a: chrG8: 20761711-20761846 [-]
• ppe-MIR167b: chrG8: 20759419-20759555 [-]

Database links

• miRBase Tracker:MI0026079

Mature sequence ppe-miR167b

• Accession: MIMAT0031451
• Sequence: 34 - ugaagcugccagcaugaucua - 54
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).