Stem-loop sequence ppe-MIR169d

Accession

MI0026086 (change log)

Description

Prunus persica miR169d stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

7 open access papers mention ppe-MIR169d
(20 sentences)

Stem-loop

         ug     a    -u          ua            ga       ------a    ua   c 
5' gagucu  cauga gaga  ggagaguaga  ugagccaaggau  cuugcca       agca  ugg c
   ||||||  ||||| ||||  ||||||||||  ||||||||||||  |||||||       ||||  ||| u
3' cuuaga  guacu cucu  ucucucguuu  acuugguuccug  gaacggu       uugu  acc u
         gu     -    uu          gc            uc       cuucuaa    uc   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 5662982-5663116 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR169d

• ppe-MIR169k: chrG1: 5660948-5661097 [-]
• ppe-MIR169d: chrG1: 5662982-5663116 [+]

Database links

• miRBase Tracker:MI0026086

Mature sequence ppe-miR169d

• Accession: MIMAT0031458
• Sequence: 32 - ugagccaaggaugacuugcca - 52
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).