Stem-loop sequence ppe-MIR169g

Accession

MI0026088 (change log)

Description

Prunus persica miR169g stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

7 open access papers mention ppe-MIR169g
(21 sentences)

Stem-loop

   gac       -       ua         -        u  uu   -        a     u     ccuccaguuucaugagcuuuuaccuauaauuaauuaaucug 
5'    aggaagg gaggccu  caugaagga aagagucu gu  ggu agccaagg ugacu gccug                                         c
      ||||||| |||||||  ||||||||| |||||||| ||  ||| |||||||| ||||| |||||                                         a
3'    uccuucu cuccgga  guacuuucu uucucgga cg  cua ucgguucc acuga cggac                                         g
   -cu       u       uc         c        -  cu   a        -     -     cgucggauuguccuuaaaccguguuauaauuacacuucuuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG3: 27020690-27020901 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR169g

• ppe-MIR169i: chrG3: 27020399-27020594 [+]
• ppe-MIR169g: chrG3: 27020690-27020901 [+]

Database links

• miRBase Tracker:MI0026088

Mature sequence ppe-miR169g

• Accession: MIMAT0031460
• Sequence: 44 - uagccaaggaugacuugccugc - 65
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).